32874 SodA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32874 chr_3 SodA 877515 878405 + SodA

Synonyms

NCBI ID Ensembl Genomes exon ID
7444762 Thaps32874.2, Thaps32874.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0028

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0231
 0.32

Most Highly Correlated Transcripts

270261

hypothetical protein
0.9329

270222

0.9262

21472

NA
0.9222

bd1893

(bd1893) NA
0.9188

bd1306

(bd1306) NA
0.9104

bd1645

(bd1645) tpt
0.9085

9513

hypothetical protein
0.9082

36078

PRX5_like
0.9077

39813

Chloroa_b-bind superfamily
0.9073

3878

(PPI2) cyclophilin_ABH_like
0.9071

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sod_Fe_C superfamily Iron/manganese superoxide dismutases, C-terminal domain; superoxide dismutases (SODs) catalyse the... - 160.534 1.10E-49 118 - 229 superfamily 251524
Sod_Fe_C superfamily Iron/manganese superoxide dismutases, C-terminal domain; superoxide dismutases (SODs) catalyse the... - 160.534 1.10E-49 118 - 229 superfamily 251524
Sod_Fe_N superfamily Iron/manganese superoxide dismutases, alpha-hairpin domain; superoxide dismutases (SODs) catalyse... - 106.987 2.11E-29 28 - 109 superfamily 249570
SodA Superoxide dismutase [Inorganic ion transport and metabolism] - 272.988 2.83E-92 28 - 230 multi-dom 223678

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12583 PHATRDRAFT_12583 185706 308940 364889 Cre02.g096150.t1.2 Not available 285170

KEGG

KEGG description KEGG Pathway
Peroxisome map04146

GO Terms

GO:0004784 GO:0006801 GO:0046872 GO:0004785 GO:0008382 GO:0008383 GO:0016954 -

GO:0004784

superoxide dismutase activity

Details: 
Catalysis of the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide.
GO Category: 
MF

GO:0006801

superoxide metabolic process

Details: 
The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species.
GO Category: 
BP

GO:0046872

metal ion binding

Details: 
Interacting selectively and non-covalently with any metal ion.
GO Category: 
MF

GO:0004785

NA

Details: 
NA
GO Category: 
NA

GO:0008382

NA

Details: 
NA
GO Category: 
NA

GO:0008383

NA

Details: 
NA
GO Category: 
NA

GO:0016954

NA

Details: 
NA
GO Category: 
NA

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