33008 PLN02338
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33008 chr_3 PLN02338 1993303 1994763 + PLN02338

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps33008.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0048

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0156
 0.33

Most Highly Correlated Transcripts

33008

PLN02338
1

bd258

(bd258) HU
0.9239

268875

hypothetical protein
0.9191

1326

sopT
0.9143

bd1380

(bd1380) ycf39
0.9127

21043

hypothetical protein
0.9126

34864

FkpA
0.9104

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9088

24247

hypothetical protein
0.9085

bd208

(bd208) DUF3529
0.9072

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-... cl00288 478.976 2.74E-166 58 - 484 specific 238797
EPT_RTPC-like superfamily This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3'... - 478.976 2.74E-166 58 - 484 superfamily 260328
PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase - 767.759 0 47 - 486 multi-dom 177972

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_18246 PHATRDRAFT_18246 226008 202778 Not available Cre03.g181300.t1.2 AT2G45300.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003866 GO:0016089 -

GO:0003866

3-phosphoshikimate 1-carboxyvinyltransferase activity

Details: 
Catalysis of the reaction: 3-phosphoshikimate + phosphoenolpyruvate = 5-O-(1-carboxyvinyl)-3-phosphoshikimate + phosphate.
GO Category: 
MF

GO:0016089

NA

Details: 
NA
GO Category: 
NA

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