33096 UNC-50Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
33096	chr_3	UNC-50	875802	876929	-	UNC-50

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448729	Thaps33096.3, Thaps33096.1, Thaps33096.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0102

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0116	0.38	0.00003 12000

Most Highly Correlated Transcripts

270222 0.9492	261711 Sulfotransfer_1 superfamily 0.8943	7617 hypothetical protein 0.8879	37834 ATP-synt_C superfamily 0.8733	261400 NA 0.8694	573 ATP-synt_C superfamily 0.867
16295 FBPase 0.8667	7655 hypothetical protein 0.8631	10856 hypothetical protein 0.8609	2496 hypothetical protein 0.8601

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UNC-50 superfamily		UNC-50 family; Gmh1p from S. cerevisiae is located in the Golgi membrane and interacts with ARF...	-	253.32	1.53E-83	52 - 286	superfamily	253094
UNC-50 superfamily		UNC-50 family; Gmh1p from S. cerevisiae is located in the Golgi membrane and interacts with ARF...	-	253.32	1.53E-83	52 - 286	superfamily	253094

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_12863	PHATRDRAFT_12863	198352	182821	98222	Cre06.g250350.t1.2	AT2G15240.1	565867

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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