33228 SynN superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33228 chr_3 SynN superfamily 11168 12193 + SynN superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7452782 Thaps33228.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0180

Most Highly Correlated Transcripts

7304

hypothetical protein
0.8909

21271

hypothetical protein
0.8828

35728

FtsZ_type1
0.8826

16295

FBPase
0.881

4767

hypothetical protein
0.8698

24133

hypothetical protein
0.8674

23833

hypothetical protein
0.8649

262675

AAA
0.8639

13448

Sec1
0.8634

3693

SWIB
0.8583

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SynN superfamily Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the... - 68.8502 2.61E-14 77 - 233 superfamily 238105

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 226979 210319 465386 Cre13.g588550.t1.2 AT1G61290.1 294753

KEGG

KEGG description KEGG Pathway
SNARE interactions in vesicular transport map04130

GO Terms

GO:0016020 -

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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