3344 Mpv17_PMP22Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3344	chr_3	Mpv17_PMP22	730854	731799	-	Mpv17_PMP22

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444734	Thaps3344.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0021

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0139	0.40	0.0028 1

Most Highly Correlated Transcripts

268062 PRK14293 0.8498	31287 AAA_12 0.8442	3345 hypothetical protein 0.8423	24225 hypothetical protein 0.8363	31751 PKCI_related 0.8358	35408 PRK05134 0.833
41655 Chloroa_b-bind 0.8135	24832 hypothetical protein 0.8071	36525 PRK09427 0.8026	4108 hypothetical protein 0.801

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Mpv17_PMP22 superfamily		Mpv17 / PMP22 family; The 22-kDa peroxisomal membrane protein (PMP22) is a major component of...	-	67.6408	1.00E-14	171 - 233	superfamily	252388
Mpv17_PMP22 superfamily		Mpv17 / PMP22 family; The 22-kDa peroxisomal membrane protein (PMP22) is a major component of...	-	67.6408	1.00E-14	171 - 233	superfamily	252388

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_42565	PHATRDRAFT_42565	184944	173533	461485	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 GO:0016021 -

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