31287 AAA_12Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
31287	chr_1	AAA_12	3025454	3027856	+	AAA_12

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445482	Thaps31287.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0020

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0127	0.38	0.02 2.2

Most Highly Correlated Transcripts

41655 Chloroa_b-bind 0.9075	270343 hypothetical protein 0.8835	261400 NA 0.8807	36669 TPT 0.8788	35408 PRK05134 0.8782	268192 Zip superfamily 0.8764
40801 Trans_IPPS_HT 0.8638	25570 hypothetical protein 0.8614	268908 Trans_IPPS_HH 0.8597	4465 hypothetical protein 0.8578

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_12 superfamily		AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	-	221.268	9.69E-67	544 - 742	superfamily	257490
AAA_12 superfamily		AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	-	221.268	9.69E-67	544 - 742	superfamily	257490
TIGR00376		DNA helicase, putative; The gene product may represent a DNA helicase. Eukaryotic members of this...	-	220.071	1.09E-61	82 - 762	multi-dom	232945

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	168641	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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