33685 (MCM1) PRK09426
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33685 chr_4 (MCM1) PRK09426 1562151 1564451 - PRK09426

Synonyms

NCBI ID Ensembl Genomes exon ID
7443705 Thaps33685.1, Thaps33685.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0006

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0261
 0.35

Most Highly Correlated Transcripts

34514

PLN02539
0.9293

10353

hypothetical protein
0.8994

6140

hypothetical protein
0.8957

263810

PTZ00430
0.8936

5807

hypothetical protein
0.8914

3694

hypothetical protein
0.8912

10055

hypothetical protein
0.8895

37793

hypothetical protein
0.8894

20753

PDI_a_family
0.8879

10889

hypothetical protein
0.8875

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MM_CoA_mutase_alpha_like Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, Alpha subunit-like... cl00817 945.252 0 26 - 556 specific 239651
MM_CoA_mutase superfamily Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM)-like family; contains proteins... - 945.252 0 26 - 556 superfamily 242116
MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which... cl00293 180.096 3.14E-53 605 - 723 specific 239022
B12-binding_like superfamily B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (... - 180.096 3.14E-53 605 - 723 superfamily 260332
PRK09426 methylmalonyl-CoA mutase; Reviewed - 1221.65 0 26 - 733 multi-dom 236508

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51830 PHATRDRAFT_51830 279011 261420 445439 Not available Not available 542262

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0004494 GO:0008152 GO:0050897 GO:0016853 -

GO:0004494

methylmalonyl-CoA mutase activity

Details: 
Catalysis of the reaction: (R)-methylmalonyl-CoA = succinyl-CoA.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0050897

cobalt ion binding

Details: 
Interacting selectively and non-covalently with a cobalt (Co) ion.
GO Category: 
MF

GO:0016853

isomerase activity

Details: 
Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
GO Category: 
MF

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