33759 HECTc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33759 chr_4 HECTc 106126 107550 + HECTc

Synonyms

NCBI ID Ensembl Genomes exon ID
7446727 Thaps33759.2, Thaps33759.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0246

Most Highly Correlated Transcripts

33895

GlcD
0.9361

262821

AAA
0.9283

264321

PP2Cc
0.927

261324

PLN02724
0.9204

25187

PI3Kc_like superfamily
0.9142

28004

hypothetical protein
0.9139

19421

HECT
0.9133

261019

HECTc
0.9116

22507

hypothetical protein
0.9102

264002

guanyl nucleotide exchange factor
0.9091

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds... cl00077 435.07 1.63E-150 93 - 444 specific 238033
HECTc superfamily HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds... - 435.07 1.63E-150 93 - 444 superfamily 260176
HECTc Domain Homologous to E6-AP Carboxyl Terminus with; E3 ubiquitin-protein ligases. Can bind to E2... - 405.079 3.39E-139 121 - 444 multi-dom 214523

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12562 PHATRDRAFT_12562 169500 326262 Not available Cre01.g012450.t1.1 AT1G55860.1 529140

KEGG

KEGG description KEGG Pathway
Ubiquitin mediated proteolysis map04120

GO Terms

GO:0004842 GO:0005622 GO:0006464 GO:0006512 -

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006464

cellular protein modification process

Details: 
The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
GO Category: 
BP

GO:0006512

NA

Details: 
NA
GO Category: 
NA

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