3408 FANCL_C superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3408	chr_3	FANCL_C superfamily	888844	890586	+	FANCL_C superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444765	Thaps3408.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0400

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0047	0.45

Most Highly Correlated Transcripts

11617 hypothetical protein 0.9292	950 hypothetical protein 0.9244	1086 Glyco_transf_49 superfamily 0.9214	5066 hypothetical protein 0.9146	2742 DUF1336 superfamily 0.9136	8562 hypothetical protein 0.9115
262619 Spc97_Spc98 0.9107	24096 Aa_trans superfamily 0.9095	5641 hypothetical protein 0.9077	4565 hypothetical protein 0.9064

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
FANCL_C superfamily		FANCL C-terminal domain; This domain is found at the C-terminus of the Fancl protein in humans...	-	91.7132	1.89E-22	495 - 573	superfamily	204746

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	359119	Not available	AT5G65740.2	528336

KEGG

KEGG description	KEGG Pathway
Ubiquitin mediated proteolysis	map04120

GO Terms

Not available -

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