34093 COG1691
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34093 chr_5 COG1691 453721 454666 - COG1691

Synonyms

NCBI ID Ensembl Genomes exon ID
7449692 Thaps34093.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0039

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0139
 0.40

Most Highly Correlated Transcripts

bd208

(bd208) DUF3529
0.9627

bd1380

(bd1380) ycf39
0.9529

bd1306

(bd1306) NA
0.9313

4108

hypothetical protein
0.9301

bd1403

(bd1403) NA
0.9291

bd1652

(bd1652) ABC_ATPase superfamily
0.9175

bd1645

(bd1645) tpt
0.9154

14192

PLN02449
0.9125

38306

Chloroa_b-bind
0.9082

bd211

(bd211) Maf_Ham1 superfamily
0.9055

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AIRC AIR carboxylase; Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-... cl00310 129.574 1.50E-36 182 - 311 specific 214965
AIRC superfamily AIR carboxylase; Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-... - 129.574 1.50E-36 182 - 311 superfamily 260343
COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only] - 254.241 3.15E-83 65 - 314 multi-dom 224605

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
3438 PHATRDRAFT_52684 PHATRDRAFT_52684 218749 225980 Not available Cre01.g035100.t1.2 Not available 454155

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004638 GO:0006189 GO:0009320 -

GO:0004638

phosphoribosylaminoimidazole carboxylase activity

Details: 
Catalysis of the reaction: 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + 2 H(+) = 5-amino-1-(5-phospho-D-ribosyl)imidazole + CO(2).
GO Category: 
MF

GO:0006189

'de novo' IMP biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.
GO Category: 
BP

GO:0009320

phosphoribosylaminoimidazole carboxylase complex

Details: 
A protein complex that possesses phosphoribosylaminoimidazole carboxylase activity.
GO Category: 
CC

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