34094 CdCA1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
34094	chr_5	CdCA1	499757	501161	-	CdCA1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449704	Thaps34094.4, Thaps34094.7, Thaps34094.6, Thaps34094.1, Thaps34094.5, Thaps34094.3, Thaps34094.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0012

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0283	0.35	15 620

Most Highly Correlated Transcripts

bd635 (bd635) NA 0.8791	bd735 (bd735) NA 0.8533	23620 hypothetical protein 0.8429	270222 0.8274	ThpsCp130 (ycf35) Ycf35 0.8026	269699 hypothetical protein 0.7955
bd1959 (bd1959) NA 0.7906	bd1808 (bd1808) NA 0.7844	bd643 (bd643) NA 0.7812	263287 COG4705 0.7798

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CdCA1 superfamily		Cadmium carbonic anhydrase repeat; This domain is the cadmium carbonic anhydrase repeat unit of the...	-	240.396	4.08E-79	41 - 247	superfamily	256061
CdCA1 superfamily		Cadmium carbonic anhydrase repeat; This domain is the cadmium carbonic anhydrase repeat unit of the...	-	240.396	4.08E-79	41 - 247	superfamily	256061

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments