34332 mre11
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34332 chr_5 mre11 1703134 1705151 - mre11

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0179

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0015
 0.38

Most Highly Correlated Transcripts

bd137

(bd137) Motor_domain superfamily
0.9003

bd668

(bd668) NA
0.8991

9569

hypothetical protein
0.8985

7601

hypothetical protein
0.8832

bd875

(bd875) NA
0.8814

11371

hypothetical protein
0.8805

261357

NAD_binding_8 superfamily
0.8748

31298

S_TKc
0.8722

263816

SNF2_N
0.8722

8003

PIG-L
0.8708

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain; Mre11 (also known as SbcD in Escherichia coli... cl13995 193.35 1.35E-57 70 - 334 specific 163616
MPP_superfamily superfamily metallophosphatase superfamily, metallophosphatase domain; Metallophosphatases (MPPs), also known... - 193.35 1.35E-57 70 - 334 superfamily 265413
Mre11_DNA_bind superfamily Mre11 DNA-binding presumed domain; The Mre11 complex is a multi-subunit nuclease that is composed... - 125.762 7.28E-34 354 - 531 superfamily 252414
mre11 DNA repair protein (mre11); All proteins in this family for which functions are known are subunits... - 409.989 1.11E-138 67 - 466 multi-dom 233033

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54699 PHATRDRAFT_54699 214824 233741 98533 Cre12.g556911.t1.1 AT5G54260.1 250783

KEGG

KEGG description KEGG Pathway
Non-homologous end-joining map03450

GO Terms

GO:0016787 GO:0004519 GO:0005634 GO:0006302 GO:0030145 -

GO:0016787

hydrolase activity

Details: 
Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO Category: 
MF

GO:0004519

endonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006302

double-strand break repair

Details: 
The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix.
GO Category: 
BP

GO:0030145

manganese ion binding

Details: 
Interacting selectively and non-covalently with manganese (Mn) ions.
GO Category: 
MF

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