34554 (psbW) PLN00039
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34554 chr_5 (psbW) PLN00039 1306287 1306737 - PLN00039

Synonyms

NCBI ID Ensembl Genomes exon ID
7450088 Thaps34554.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0060

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0027
 0.38

Most Highly Correlated Transcripts

bd760

(bd760) ZnMc superfamily
0.8991

bd1306

(bd1306) NA
0.8921

bd2050

(bd2050) rpoC2
0.8919

bd718

(bd718) PRK10387
0.8913

bd897

(bd897) NA
0.8732

8808

COG0398
0.8719

bd1403

(bd1403) NA
0.8605

bd211

(bd211) Maf_Ham1 superfamily
0.8499

bd1161

(bd1161) NA
0.8439

bd208

(bd208) DUF3529
0.8435

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN00039 photosystem II reaction center Psb28 protein; Provisional cl04326 201.136 6.48E-67 37 - 148 specific 177673
Psb28 superfamily Psb28 protein; Psb28 is a 13 kDa soluble protein that is directly assembled in dimeric PSII... - 201.136 6.48E-67 37 - 148 superfamily 243708

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 231595 297466 59601 Cre10.g440450.t1.2 AT4G28660.1 Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0009654 GO:0015979 GO:0016020 -

GO:0009654

photosystem II oxygen evolving complex

Details: 
A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ).
GO Category: 
CC

GO:0015979

photosynthesis

Details: 
The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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