34830 MSP superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34830 chr_6 MSP superfamily 1756664 1757491 + MSP superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps34830.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0022

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0218
 0.15

Most Highly Correlated Transcripts

270210

(PsbO) oxygen-evolving enhancer protein 1 precursor
0.9942

bd218

(bd218) Chloroa_b-bind superfamily
0.9919

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9879

bd1820

(bd1820) Fasciclin
0.9869

24080

(Lhcr1) fucoxanthin chl a/c light-harvesting protein, lhcr type
0.9811

2601

(Lhca2) Chloroa_b-bind
0.9782

270242

(PsbM) photosystem II reaction center M protein, plastid precursor
0.9769

26246

(Lhcr3) fucoxanthin chl a/c light-harvesting protein
0.971

34276

Chloroa_b-bind
0.9693

bd1863

(bd1863) NA
0.961

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MSP superfamily Manganese-stabilizing protein / photosystem II polypeptide; This family consists of the 33 KDa... - 396.124 1.25E-138 1 - 275 superfamily 186564

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_20331 PHATRDRAFT_20331 167955 243554 440922 Cre09.g396213.t1.1 AT3G50820.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005509 GO:0009654 GO:0015979 GO:0019898 GO:0042549 -

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

GO:0009654

photosystem II oxygen evolving complex

Details: 
A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ).
GO Category: 
CC

GO:0015979

photosynthesis

Details: 
The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO Category: 
BP

GO:0019898

extrinsic component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
GO Category: 
CC

GO:0042549

photosystem II stabilization

Details: 
The stabilization of the photosystem II protein complex, resulting from the phosphorylation of its structural protein subunits, in a cell actively involved in photosynthesis.
GO Category: 
BP

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