35248 HepAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
35248	chr_7	HepA	970896	972179	+	HepA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444126	Thaps35248.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0246

Most Highly Correlated Transcripts

15114 Zinc_peptidase_like superfamily 0.894	22009 (Tp_CCHH21) regulator [Rayko] 0.891	24437 hypothetical protein 0.8906	261019 HECTc 0.8905	261324 PLN02724 0.8904	262821 AAA 0.8778
25270 hypothetical protein 0.8741	38472 HA2 0.8739	40200 TRX_reduct 0.8726	2318 Bromodomain 0.8718

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HELICc superfamily		Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast...	-	91.5304	2.47E-22	231 - 337	superfamily	238034
HELICc superfamily		Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast...	-	91.5304	2.47E-22	231 - 337	superfamily	238034
HepA		Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and...	-	204.969	2.23E-58	1 - 383	multi-dom	223627

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	300894	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 GO:0004386 GO:0005524 -

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