35544 (Tp_Myb2R4) SANT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35544 chr_7 (Tp_Myb2R4) SANT 1312120 1313765 - SANT

Synonyms

NCBI ID Ensembl Genomes exon ID
7450669 Thaps35544.2, Thaps35544.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0089

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0039
 0.52

Most Highly Correlated Transcripts

36007

Aldolase_II superfamily
0.8999

24525

hypothetical protein
0.8835

4295

hypothetical protein
0.8778

268358

hypothetical protein
0.8735

268443

SAICAR_synt_Sc
0.8683

30701

PRK05279
0.866

29139

Glycos_transf_1 superfamily
0.8653

11166

(Tp_CCHH12) regulator [Rayko]
0.863

264556

FBPase
0.8629

2540

hypothetical protein
0.861

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... cl17250 64.9042 2.64E-13 366 - 409 specific 238096
SANT superfamily 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... - 64.9042 2.64E-13 366 - 409 superfamily 266586

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0005634 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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