35907 Prp18
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35907 chr_8 Prp18 965111 966335 - Prp18

Synonyms

NCBI ID Ensembl Genomes exon ID
7449861 Thaps35907.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0427

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0107
 0.36

Most Highly Correlated Transcripts

37497

cysE
0.9245

24921

HA
0.923

36007

Aldolase_II superfamily
0.9038

19059

SynMuv_product superfamily
0.8986

19158

GRX_PICOT_like
0.8982

2073

hypothetical protein
0.8981

1676

hypothetical protein
0.8974

270222

0.8958

268257

fabG
0.8943

13794

WD40
0.8904

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Prp18 superfamily Prp18 domain; The splicing factor Prp18 is required for the second step of pre-mRNA splicing. The... - 206.698 4.30E-65 254 - 395 superfamily 251567
Prp18 superfamily Prp18 domain; The splicing factor Prp18 is required for the second step of pre-mRNA splicing. The... - 206.698 4.30E-65 254 - 395 superfamily 251567

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12898 PHATRDRAFT_12898 163673 156609 438550 Cre13.g567750.t1.2 AT1G54590.1 489594

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0005681 GO:0008380 -

GO:0005681

spliceosomal complex

Details: 
Any of a series of ribonucleoprotein complexes that contain RNA and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the splicing of a messenger RNA primary transcript to excise an intron.
GO Category: 
CC

GO:0008380

RNA splicing

Details: 
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
GO Category: 
BP

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