35963 CE4_SF superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35963 chr_8 CE4_SF superfamily 1094835 1097384 + CE4_SF superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7452360 Thaps35963.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0269

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0135
 0.41

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9764

31145

COG4581
0.9035

20625

DUF4602
0.9013

269925

AAA_12 superfamily
0.8915

32395

RNA_pol
0.8914

1564

DUF667
0.8836

37705

DUF4110
0.8758

268455

hypothetical protein
0.8691

9754

hypothetical protein
0.8562

20825

hypothetical protein
0.8551

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine... cl00220 159.357 6.93E-45 649 - 827 specific 238245
cysteine_hydrolases superfamily Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine... - 159.357 6.93E-45 649 - 827 superfamily 260273
CE4_SF superfamily Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily; The carbohydrate... - 205.553 6.64E-60 305 - 594 superfamily 265761
uraD_N-term-dom putative urate catabolism protein; This model represents a protein that is predominantly found just... - 64.7421 1.76E-11 316 - 607 multi-dom 211797

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46626 PHATRDRAFT_46626 Not available Not available 70288 Cre10.g448500.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0008152 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

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