36076 HDAC_classIVThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
36076	chr_8	HDAC_classIV	1156040	1157573	-	HDAC_classIV

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452375	Thaps36076.1, Thaps36076.4, Thaps36076.3, Thaps36076.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0214

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0269	0.41	25000 54000

Most Highly Correlated Transcripts

7304 hypothetical protein 0.8549	5701 hypothetical protein 0.8531	33353 TRX_family 0.8515	1871 hypothetical protein 0.8437	2317 Mito_carr 0.8416	261400 NA 0.8413
11490 hypothetical protein 0.841	3730 hypothetical protein 0.8388	4760 pro_imino_pep_2 0.8377	2107 hypothetical protein 0.8377

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HDAC_classIV		Histone deacetylase class IV also known as histone deacetylase 11; Class IV histone deacetylases (...	cl17011	341.014	6.11E-115	137 - 433	specific	212519
Arginase_HDAC superfamily		Arginase-like and histone-like hydrolases; Arginase-like/histone-like hydrolase superfamily...	-	341.014	6.11E-115	137 - 433	superfamily	266496

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_9278	PHATRDRAFT_9278	159918	179026	438958	Cre08.g358555.t1.1	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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