3622 CDP-ME_synthetaseThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3622	chr_3	CDP-ME_synthetase	1386903	1387844	+	CDP-ME_synthetase

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451276	Thaps3622.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0017

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0267	0.26	26000 48

Most Highly Correlated Transcripts

bd1306 (bd1306) NA 0.9753	bd1645 (bd1645) tpt 0.9713	bd1342 (bd1342) psaL 0.9646	bd1403 (bd1403) NA 0.9607	bd1820 (bd1820) Fasciclin 0.9561	42326 PLN02830 0.9483
bd1160 (bd1160) Chloroa_b-bind superfamily 0.9472	270348 hypothetical protein 0.9448	bd218 (bd218) Chloroa_b-bind superfamily 0.9445	bd718 (bd718) PRK10387 0.9421

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CDP-ME_synthetase		CDP-ME synthetase is involved in mevalonate-independent isoprenoid production; 4-diphosphocytidyl-2...	cl11394	244.355	6.92E-80	69 - 298	specific	133009
Glyco_tranf_GTA_type superfamily		Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a...	-	244.355	6.92E-80	69 - 298	superfamily	264347

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_21829	PHATRDRAFT_21829	273875	302582	443903	Cre16.g679669.t1.1	AT2G02500.1	Not available

KEGG

KEGG description	KEGG Pathway
Biosynthesis of secondary metabolites	map01110

GO Terms

GO:0008299 GO:0008699 GO:0050518 -

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