36297 pepsin_retropepsin_like superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
36297	chr_9	pepsin_retropepsin_like superfamily	478917	480567	+	pepsin_retropepsin_like superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449326	Thaps36297.1, Thaps36297.4, Thaps36297.3, Thaps36297.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0424

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0180	0.31	110000 16

Most Highly Correlated Transcripts

bd410 (bd410) HNHc 0.9694	bd1841 (bd1841) CAP10 superfamily 0.9653	bd415 (bd415) arom_aa_hydroxylase superfamily 0.964	bd1808 (bd1808) NA 0.939	23779 hypothetical protein 0.932	bd1941 (bd1941) NA 0.9284
21720 hypothetical protein 0.9032	bd1793 (bd1793) NA 0.8931	20708 MPP_ACP5 0.892	41632 Asp 0.8871

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
pepsin_retropepsin_like superfamily		Cellular and retroviral pepsin-like aspartate proteases; This family includes both cellular and...	-	336.331	1.86E-112	115 - 435	superfamily	264354
Asp		Eukaryotic aspartyl protease; Aspartyl (acid) proteases include pepsins, cathepsins, and renins....	-	323.087	2.12E-107	124 - 435	multi-dom	249520

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_16168	PHATRDRAFT_16168	268878	252441	356350	Cre04.g226850.t1.2	AT1G11910.1	352787

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004194 GO:0006508 GO:0004190 GO:0004196 -

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