36366 Ape1-like_AP-endo
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
36366 chr_10 Ape1-like_AP-endo 538823 540557 - Ape1-like_AP-endo
NCBI ID Ensembl Genomes exon ID
7446844 Thaps36366.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0066
Aldolase_II superfamily
0.9421
(RT5) rpsE_bact
0.9385
hypothetical protein
0.9216
rpsI
0.9189
OTU
0.9176
fabG
0.917
Ribosomal_L7_L12
0.9096
nascent-polypeptide-associated complex alpha polypeptide-like protein
0.909
SNF2_N
0.9079
(KE4) Zip
0.9052
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ape1-like_AP-endo Human Ape1-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases; This... cl00490 327.587 3.40E-108 245 - 573 specific 197321
EEP superfamily Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; This large superfamily includes the... - 327.587 3.40E-108 245 - 573 superfamily 260458
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47361 PHATRDRAFT_47361 182071 294764 216212 Cre03.g175850.t1.1 AT2G41460.1 408364
KEGG description KEGG Pathway
Base excision repair map03410
GO:0004519 GO:0006281 GO:0004518 GO:0003906 -

endonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
GO Category: 
MF

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

nuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids.
GO Category: 
MF

DNA-(apurinic or apyrimidinic site) lyase activity

Details: 
Catalysis of the cleavage of the C-O-P bond 3' to the apurinic or apyrimidinic site in DNA by a beta-elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate.
GO Category: 
MF
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