36568 COG2119
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36568 chr_11a COG2119 338677 340403 + COG2119

Synonyms

NCBI ID Ensembl Genomes exon ID
7448304 Thaps36568.2, Thaps36568.1, Thaps36568.4, Thaps36568.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0486

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0154
 0.36

Most Highly Correlated Transcripts

bd1891

(bd1891) COG3899
0.8787

bd1749

(bd1749) NA
0.877

bd1803

(bd1803) NA
0.8549

4524

DHQS
0.8412

24746

hypothetical protein
0.8371

36995

LplA
0.8362

38472

HA2
0.8312

36007

Aldolase_II superfamily
0.8224

19158

GRX_PICOT_like
0.8219

bd739

(bd739) NA
0.821

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
UPF0016 superfamily Uncharacterized protein family UPF0016; This family contains integral membrane proteins of unknown... - 79.0671 1.38E-18 129 - 204 superfamily 250414
UPF0016 superfamily Uncharacterized protein family UPF0016; This family contains integral membrane proteins of unknown... - 79.0671 1.38E-18 129 - 204 superfamily 250414
UPF0016 superfamily Uncharacterized protein family UPF0016; This family contains integral membrane proteins of unknown... - 79.0671 1.38E-18 129 - 204 superfamily 250414
UPF0016 superfamily Uncharacterized protein family UPF0016; This family contains integral membrane proteins of unknown... - 79.0671 1.38E-18 129 - 204 superfamily 250414
COG2119 Predicted membrane protein [Function unknown] - 154.408 6.34E-45 126 - 359 multi-dom 225030

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_6052 PHATRDRAFT_6052 161178 327808 61467 Cre17.g731300.t1.2 AT5G36290.2 553793

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005554 GO:0016020 -

GO:0005554

NA

Details: 
NA
GO Category: 
NA

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

Add comment

Log in to post comments