36716 (LPD) PRK06327
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36716 chr_11a (LPD) PRK06327 734201 735897 + PRK06327

Synonyms

NCBI ID Ensembl Genomes exon ID
7444502 Thaps36716.2, Thaps36716.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0122

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0146
 0.45

Most Highly Correlated Transcripts

bd1756

(bd1756) NA
0.917

bd1839

(bd1839) NA
0.9017

bd933

(bd933) NA
0.8639

22473

aliphatic_amidase
0.8589

bd1840

(bd1840) NA
0.8583

264670

Thioredoxin_like superfamily
0.8303

11569

hypothetical protein
0.8302

2107

hypothetical protein
0.8263

31232

(PFK1) PFK superfamily
0.8225

263327

MFS_1
0.8217

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Pyr_redox_dim superfamily Pyridine nucleotide-disulphide oxidoreductase, dimerization domain; This family includes both class... - 139.235 2.39E-39 390 - 501 superfamily 251571
Pyr_redox_dim superfamily Pyridine nucleotide-disulphide oxidoreductase, dimerization domain; This family includes both class... - 139.235 2.39E-39 390 - 501 superfamily 251571
Pyr_redox superfamily Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II... - 85.3026 3.36E-20 218 - 295 superfamily 249559
Pyr_redox superfamily Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II... - 85.3026 3.36E-20 218 - 295 superfamily 249559
PRK06327 dihydrolipoamide dehydrogenase; Validated - 611.16 0 38 - 511 multi-dom 235779

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_26432 PHATRDRAFT_26432 223069 251175 442074 Cre18.g749847.t1.1 AT1G48030.2 556052

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0006118 GO:0016491 GO:0050660 GO:0015036 GO:0005737 GO:0004148 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0050660

flavin adenine dinucleotide binding

Details: 
Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO Category: 
MF

GO:0015036

disulfide oxidoreductase activity

Details: 
Catalysis of the reaction: substrate with reduced sulfide groups = substrate with oxidized disulfide bonds.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0004148

dihydrolipoyl dehydrogenase activity

Details: 
Catalysis of the reaction: protein N6-(dihydrolipoyl)lysine + NAD+ = protein N6-(lipoyl)lysine + NADH + H+.
GO Category: 
MF

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