36960 SDR_c
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36960 chr_12 SDR_c 872036 872875 + SDR_c

Synonyms

NCBI ID Ensembl Genomes exon ID
7448011 Thaps36960.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0279

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0010
 0.38

Most Highly Correlated Transcripts

bd1692

(bd1692) NA
0.8901

bd833

(bd833) NA
0.8597

bd884

(bd884) NA
0.8584

bd1823

(bd1823) SCP superfamily
0.8561

bd885

(bd885) NA
0.844

bd1935

(bd1935) NA
0.8434

bd1954

(bd1954) NA
0.8421

bd1840

(bd1840) NA
0.8405

bd1851

(bd1851) NA
0.8345

bd737

(bd737) NA
0.831

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SDR_c classical (c) SDRs; SDRs are a functionally diverse family of oxidoreductases that have a single... cl09931 129.326 8.57E-36 22 - 190 specific 212491
NADB_Rossmann superfamily Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD... - 129.326 8.57E-36 22 - 190 superfamily 263925
adh_short short chain dehydrogenase; This family contains a wide variety of dehydrogenases. - 83.7554 8.26E-20 22 - 189 multi-dom 249592

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 243210 Not available 440884 Not available AT3G47350.1 492417

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008152 GO:0016491 GO:0016404 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0016404

15-hydroxyprostaglandin dehydrogenase (NAD+) activity

Details: 
Catalysis of the reaction: (5Z,13E)-(15S)-11-alpha,15-dihydroxy-9-oxoprost-13-enoate + NAD+ = (5Z,13E)-11-alpha-hydroxy-9,15-dioxoprost-13-enoate + NADH + H+.
GO Category: 
MF

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