37116 Nuc_sug_transp
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
37116 chr_13 Nuc_sug_transp 634705 636008 + Nuc_sug_transp

Synonyms

NCBI ID Ensembl Genomes exon ID
7447842 Thaps37116.2, Thaps37116.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0190

Most Highly Correlated Transcripts

7084

Cupin_8 superfamily
0.9133

4674

zf-DHHC
0.9067

6028

NA
0.9009

11387

SEC14
0.8923

7119

pepsin_retropepsin_like superfamily
0.8864

263436

P4Hc
0.8818

5137

hypothetical protein
0.8816

7251

hypothetical protein
0.8814

5105

hypothetical protein
0.8808

34702

Sybindin superfamily
0.8796

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
nst superfamily UDP-galactose transporter; The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-... - 169.458 8.24E-50 148 - 373 superfamily 129885
Nuc_sug_transp Nucleotide-sugar transporter; This family of membrane proteins transport nucleotide sugars from the... - 289.204 8.66E-96 131 - 366 multi-dom 252406

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_20120 PHATRDRAFT_20120 209639 198076 230385 Not available AT4G35335.1 361806

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005338 GO:0015780 GO:0016021 GO:0000139 GO:0005351 GO:0008643 -

GO:0005338

nucleotide-sugar transmembrane transporter activity

Details: 
Catalysis of the transfer of a nucleotide-sugar from one side of the membrane to the other. A nucleotide-sugar is any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
GO Category: 
MF

GO:0015780

nucleotide-sugar transport

Details: 
The directed movement of nucleotide-sugars into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Nucleotide-sugars are any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0000139

Golgi membrane

Details: 
The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
GO Category: 
CC

GO:0005351

sugar:hydrogen symporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in).
GO Category: 
MF

GO:0008643

carbohydrate transport

Details: 
The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.
GO Category: 
BP

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