34702 Sybindin superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34702 chr_6 Sybindin superfamily 1814368 1815147 - Sybindin superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7444607 Thaps34702.4, Thaps34702.2, Thaps34702.3, Thaps34702.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0187

Most Highly Correlated Transcripts

3180

hypothetical protein
0.9308

4302

DUF788 superfamily
0.9249

3890

COG0398
0.9163

24167

hypothetical protein
0.915

8376

hypothetical protein
0.913

16114

PLN02350
0.9119

4757

Leo1
0.9113

269624

TIM_phosphate_binding superfamily
0.9107

3378

DUF775 superfamily
0.9083

35314

GSH_Peroxidase
0.9082

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sybindin superfamily Sybindin-like family; Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small... - 144.768 1.58E-44 5 - 140 superfamily 248136

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_10670 PHATRDRAFT_10670 255376 206334 71104 Cre02.g077500.t1.2 AT5G02280.1 533360

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005801 GO:0006888 -

GO:0005801

cis-Golgi network

Details: 
The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum.
GO Category: 
CC

GO:0006888

ER to Golgi vesicle-mediated transport

Details: 
The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
GO Category: 
BP

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