37472 CDC39
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
37472 chr_14 CDC39 295165 301928 - CDC39

Synonyms

NCBI ID Ensembl Genomes exon ID
7450858 Thaps37472.3, Thaps37472.1, Thaps37472.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0436

Most Highly Correlated Transcripts

36007

Aldolase_II superfamily
0.8933

19421

HECT
0.875

23784

hypothetical protein
0.8744

35136

NA
0.8674

25516

hypothetical protein
0.8605

38736

S_TKc
0.8575

30701

PRK05279
0.8574

269724

PP2Cc
0.8545

264002

guanyl nucleotide exchange factor
0.853

13794

WD40
0.8506

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Not1 superfamily CCR4-Not complex component, Not1; The Ccr4-Not complex is a global regulator of transcription that... - 465.578 3.79E-148 1825 - 2179 superfamily 252341
Not1 superfamily CCR4-Not complex component, Not1; The Ccr4-Not complex is a global regulator of transcription that... - 465.578 3.79E-148 1825 - 2179 superfamily 252341
DUF3819 superfamily Domain of unknown function (DUF3819); This is an uncharacterized domain that is found on the CCR4-... - 219.368 8.09E-65 1151 - 1309 superfamily 257342
DUF3819 superfamily Domain of unknown function (DUF3819); This is an uncharacterized domain that is found on the CCR4-... - 219.368 8.09E-65 1151 - 1309 superfamily 257342
CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome... - 658.62 0 374 - 2184 multi-dom 227434

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_10354 PHATR_10354 279061 234647 423675 Cre14.g632950.t1.2 AT1G02080.2 467355

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

Not available -

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