38189 COG3349Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
38189	chr_18	COG3349	52827	54674	+	COG3349

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442168	Thaps38189.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0215

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0173	0.35	0.023 0.015

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9313	5659 hypothetical protein 0.8873	6594 hypothetical protein 0.8769	882 hypothetical protein 0.8718	6234 DUF4239 0.8682	4502 hypothetical protein 0.8611
5098 hypothetical protein 0.8608	24285 hypothetical protein 0.8605	10856 hypothetical protein 0.859	23514 hypothetical protein 0.8589

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
COG3349		Uncharacterized conserved protein [Function unknown]	-	228.844	2.96E-67	81 - 590	multi-dom	225885

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_15806	PHATRDRAFT_15806	277819	296006	64233	Cre13.g587500.t1.1	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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