38322 Sar1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38322 chr_19b_31 Sar1 25116 25817 + Sar1

Synonyms

NCBI ID Ensembl Genomes exon ID
7444377 Thaps38322.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0009

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0117
 0.49

Most Highly Correlated Transcripts

bd765

(bd765) NA
0.893

bd1645

(bd1645) tpt
0.891

bd1809

(bd1809) ZnMc_pappalysin_like
0.8734

bd1081

(bd1081) NA
0.8695

bd1306

(bd1306) NA
0.8584

bd760

(bd760) ZnMc superfamily
0.8562

bd1857

(bd1857) DnaJ
0.8504

bd1160

(bd1160) Chloroa_b-bind superfamily
0.8465

bd843

(bd843) NA
0.8465

bd1214

(bd1214) KISc_C_terminal
0.8462

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sar1 Sar1 is an essential component of COPII vesicle coats; Sar1 is an essential component of COPII... cl17170 311.134 1.19E-107 41 - 231 specific 206645
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 311.134 1.19E-107 41 - 231 superfamily 266525
COG1100 GTPase SAR1 and related small G proteins [General function prediction only] - 93.8719 2.36E-23 54 - 229 multi-dom 224025

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Protein processing in endoplasmic reticulum map04141

GO Terms

GO:0005525 GO:0007264 GO:0006886 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

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