38583 (Lhcf1) PLN00120
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38583 chr_22 (Lhcf1) PLN00120 836474 837047 - PLN00120

Synonyms

NCBI ID Ensembl Genomes exon ID
7449416 Thaps38583.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0022

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0218
 0.15

Most Highly Correlated Transcripts

260392

(Lhcf2) fucoxanthin chlorophyll a/c protein 2
0.9975

bd218

(bd218) Chloroa_b-bind superfamily
0.9881

42962

(Lhcf5) PLN00120
0.9772

bd1820

(bd1820) Fasciclin
0.9761

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9758

38715

PLN00120
0.9731

39813

Chloroa_b-bind superfamily
0.972

21472

NA
0.9656

5174

(Lhcf8) PLN00120
0.9636

31983

Chloroa_b-bind superfamily
0.9614

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional cl02879 349.427 3.17E-123 11 - 190 specific 215063
Chloroa_b-bind superfamily Chlorophyll A-B binding protein; Chlorophyll A-B binding protein. - 349.427 3.17E-123 11 - 190 superfamily 261492

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0009765 GO:0016020 -

GO:0009765

photosynthesis, light harvesting

Details: 
Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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