5174 (Lhcf8) PLN00120Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5174	chr_5	(Lhcf8) PLN00120	531491	532974	+	PLN00120

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449709	Thaps5174.2, Thaps5174.1, Thaps5174.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0022

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0218	0.15	610 9100

Most Highly Correlated Transcripts

bd218 (bd218) Chloroa_b-bind superfamily 0.9885	42962 (Lhcf5) PLN00120 0.9831	bd1820 (bd1820) Fasciclin 0.9811	270233 hypothetical protein 0.9758	bd1160 (bd1160) Chloroa_b-bind superfamily 0.9755	260392 (Lhcf2) fucoxanthin chlorophyll a/c protein 2 0.9719
270241 (Lhcf11) fucoxanthin-chlorophyll a-c binding protein, plastid precursor 0.9688	268127 (Lhcf9) PLN00120 0.9668	38494 PLN00120 0.9646	38583 (Lhcf1) PLN00120 0.9636

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PLN00120		fucoxanthin-chlorophyll a-c binding protein; Provisional	cl02879	335.945	1.16E-115	138 - 327	specific	215063
Chloroa_b-bind superfamily		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	-	335.945	1.16E-115	138 - 327	superfamily	261492

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0009765 GO:0016020 -

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