38616 FRQ1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
38616	chr_22	FRQ1	711456	712208	+	FRQ1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443926	Thaps38616.1, Thaps38616.2, Thaps38616.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0186

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0064	0.41	0.00087 7.6

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9164	23960 hypothetical protein 0.8999	23414 hypothetical protein 0.8955	1934 hypothetical protein 0.8862	10752 hypothetical protein 0.8859	8232 hypothetical protein 0.8858
7874 hypothetical protein 0.8831	5074 hypothetical protein 0.8827	25040 NA 0.8824	11848 hypothetical protein 0.8782

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
FRQ1		Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell...	-	70.0305	1.72E-15	55 - 202	multi-dom	227455

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005509 -

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