38647 REC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38647 chr_22 REC 537694 540340 + REC

Synonyms

NCBI ID Ensembl Genomes exon ID
7443895 Thaps38647.2, Thaps38647.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0214

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0245
 0.28

Most Highly Correlated Transcripts

261400

NA
0.9315

6693

hypothetical protein
0.9304

11998

hypothetical protein
0.9058

262271

PIP5K
0.9007

262363

hypothetical protein
0.8981

3500

hypothetical protein
0.8938

261640

MFS
0.8927

7216

hypothetical protein
0.8919

5038

DUF179
0.8917

3354

hypothetical protein
0.8907

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB),... cl19078 108.432 2.11E-27 554 - 666 specific 238088
REC superfamily Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB),... - 108.432 2.11E-27 554 - 666 superfamily 267431

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47930 PHATRDRAFT_47930 242653 250846 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000156 GO:0000160 GO:0003677 GO:0006355 -

GO:0000156

phosphorelay response regulator activity

Details: 
Responds to a phosphorelay sensor to initiate a change in cell state or activity. The activity of the response regulator is regulated by transfer of a phosphate from a histidine residue in the sensor, to an aspartate residue in the response regulator. Many but not all response regulators act as transcriptional regulators to elicit a response.
GO Category: 
MF

GO:0000160

phosphorelay signal transduction system

Details: 
A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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