38757 trmE
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38757 chr_22 trmE 50576 52744 + trmE

Synonyms

NCBI ID Ensembl Genomes exon ID
7443661 Thaps38757.2, Thaps38757.1, Thaps38757.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0186
 0.38

Most Highly Correlated Transcripts

bd1945

(bd1945) NA
0.842

4038

hypothetical protein
0.8417

21943

Gar1 superfamily
0.8355

12259

COG1204
0.835

36845

(RPA2_1) RpoB
0.8342

24445

hypothetical protein
0.8261

13578

SrmB
0.8232

11962

hypothetical protein
0.8216

262731

hypothetical protein
0.8201

24990

hypothetical protein
0.8196

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
trmE trmE is a tRNA modification GTPase; TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria... cl17170 175.375 3.54E-51 441 - 615 specific 206727
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 175.375 3.54E-51 441 - 615 superfamily 266525
TrmE_N superfamily GTP-binding protein TrmE N-terminus; This family represents the shorter, B, chain of the homo-... - 121.735 2.41E-32 187 - 331 superfamily 204472
TrmE_N superfamily GTP-binding protein TrmE N-terminus; This family represents the shorter, B, chain of the homo-... - 121.735 2.41E-32 187 - 331 superfamily 204472
GTPase_Cys_C superfamily Catalytic cysteine-containing C-terminus of GTPase, MnmE; This short C-terminal region contains the... - 93.3651 8.14E-23 626 - 696 superfamily 257176
GTPase_Cys_C superfamily Catalytic cysteine-containing C-terminus of GTPase, MnmE; This short C-terminal region contains the... - 93.3651 8.14E-23 626 - 696 superfamily 257176
trmE tRNA modification GTPase TrmE; Reviewed - 439.161 4.17E-147 187 - 699 multi-dom 235392

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd1812 PHATRDRAFT_bd1812 183538 207495 72078 Cre16.g681238.t1.1 AT1G78010.1 479901

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

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