38909 PLN02627
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38909 chr_24 PLN02627 97199 100051 - PLN02627

Synonyms

NCBI ID Ensembl Genomes exon ID
7452000 Thaps38909.2, Thaps38909.3, Thaps38909.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0015

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0185
 0.25

Most Highly Correlated Transcripts

bd1306

(bd1306) NA
0.9508

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9486

bd1645

(bd1645) tpt
0.9438

22546

hypothetical protein
0.9438

bd1820

(bd1820) Fasciclin
0.9399

270312

hypothetical protein
0.9375

bd1765

(bd1765) NA
0.9322

11822

hypothetical protein
0.9304

bd218

(bd218) Chloroa_b-bind superfamily
0.9286

258111

hypothetical protein
0.9282

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase; Discriminating Glutamyl-tRNA... cl00015 348.422 3.77E-113 136 - 469 specific 173905
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 348.422 3.77E-113 136 - 469 superfamily 260139
tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins. This family contains a diverse fraction of tRNA... cl00320 170.102 2.40E-49 717 - 821 specific 239198
tRNA_bindingDomain superfamily The tRNA binding domain is also known as the Myf domain in literature. This domain is found in a... - 170.102 2.40E-49 717 - 821 superfamily 260352
PLN02627 glutamyl-tRNA synthetase - 873.682 0 134 - 653 multi-dom 178234

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 416006 Cre07.g313700.t1.1 AT5G64050.1 Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004818 GO:0005524 GO:0006424 GO:0004812 GO:0006418 GO:0005737 GO:0009332 -

GO:0004818

glutamate-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006424

glutamyl-tRNA aminoacylation

Details: 
The process of coupling glutamate to glutamyl-tRNA, catalyzed by glutamyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'- adenosine residue of the tRNA.
GO Category: 
BP

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0009332

glutamate-tRNA ligase complex

Details: 
An enzyme complex that catalyzes the ligation of glutamate and tRNA(Glu) to form glutamyl-tRNA(Glu).
GO Category: 
CC

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