38973 RabGAP-TBC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38973 chr_1 RabGAP-TBC 330005 333182 + RabGAP-TBC

Synonyms

NCBI ID Ensembl Genomes exon ID
7442884 Thaps38973.4, Thaps38973.2, Thaps38973.3, Thaps38973.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0483

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0023
 0.43

Most Highly Correlated Transcripts

270222

0.8841

bd735

(bd735) NA
0.8814

bd1692

(bd1692) NA
0.8479

bd1877

(bd1877) NA
0.8448

7335

hypothetical protein
0.834

bd738

(bd738) NA
0.8175

7336

hypothetical protein
0.8161

4146

hypothetical protein
0.8153

bd1801

(bd1801) NA
0.8138

bd737

(bd737) NA
0.8106

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered... cl02442 73.9141 1.08E-15 203 - 274 specific 239836
DEP superfamily DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered... - 73.9141 1.08E-15 203 - 274 superfamily 261288
RabGAP-TBC Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are... cl02495 197.207 1.32E-57 627 - 860 specific 249964
RabGAP-TBC superfamily Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are... - 197.207 1.32E-57 627 - 860 superfamily 261308

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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