3929 Peptidase_C48 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3929 chr_3 Peptidase_C48 superfamily 2162587 2165226 + Peptidase_C48 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7452107 Thaps3929.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0128

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0035
 0.44

Most Highly Correlated Transcripts

25619

hypothetical protein
0.9341

6207

hypothetical protein
0.9306

21220

KU superfamily
0.9273

12836

EEP superfamily
0.9238

268825

COG5647
0.9188

24618

hypothetical protein
0.9172

261908

PLN02889
0.9148

21843

hypothetical protein
0.9122

23450

hypothetical protein
0.9087

22265

hypothetical protein
0.908

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_C48 superfamily Ulp1 protease family, C-terminal catalytic domain; This domain contains the catalytic triad Cys-His... - 64.93 4.81E-11 463 - 585 superfamily 266836

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006508 GO:0008234 GO:0004197 GO:0016946 -

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008234

cysteine-type peptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004197

cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0016946

NA

Details: 
NA
GO Category: 
NA

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