3973 (Tp_E2F-DP3) E2F_TDP
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3973 chr_3 (Tp_E2F-DP3) E2F_TDP 2262006 2263686 + E2F_TDP

Synonyms

NCBI ID Ensembl Genomes exon ID
7452739 Thaps3973.1, Thaps3973.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0464

Most Highly Correlated Transcripts

261569

RRM3_CELF1-6
0.8625

3954

MIT_CorA-like superfamily
0.8516

25871

hypothetical protein
0.8457

22931

Glycos_transf_1 superfamily
0.8284

5557

DUS_like_FMN
0.8257

268194

(Tp_Myb4R1b) SANT
0.8257

25653

hypothetical protein
0.8229

3949

CCL1
0.807

8130

hypothetical protein
0.8052

8035

CLASP_N superfamily
0.804

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
E2F_TDP superfamily E2F/DP family winged-helix DNA-binding domain; This family contains the transcription factor E2F... - 80.6891 1.04E-18 239 - 312 superfamily 251219
E2F_TDP superfamily E2F/DP family winged-helix DNA-binding domain; This family contains the transcription factor E2F... - 80.6891 1.04E-18 239 - 312 superfamily 251219

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48930 PHATRDRAFT_48930 249269 70323 Not available Not available AT3G01330.1 523918

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000074 GO:0003700 GO:0005667 GO:0006355 -

GO:0000074

NA

Details: 
NA
GO Category: 
NA

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005667

transcription factor complex

Details: 
A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

Add comment

Log in to post comments