40232 (OAM1) Glyco_hydro_47 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40232 chr_4 (OAM1) Glyco_hydro_47 superfamily 557554 559106 - Glyco_hydro_47 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7447469 Thaps40232.2, Thaps40232.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0208

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0245
 0.28

Most Highly Correlated Transcripts

15464

PCI
0.9207

8784

hypothetical protein
0.9192

31829

CBS_like
0.9186

261400

NA
0.9161

4502

hypothetical protein
0.9067

262271

PIP5K
0.9057

23817

hypothetical protein
0.905

262207

Trp-synth-beta_II superfamily
0.9036

6693

hypothetical protein
0.9009

4292

hypothetical protein
0.8977

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Glyco_hydro_47 superfamily Glycosyl hydrolase family 47; Members of this family are alpha-mannosidases that catalyse the... - 554.719 0 1 - 445 superfamily 263593

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd36 PHATRDRAFT_bd36 168118 246753 68883 Not available AT1G51590.2 332766

KEGG

KEGG description KEGG Pathway
Protein processing in endoplasmic reticulum map04141

GO Terms

GO:0004571 GO:0005509 GO:0006487 GO:0016020 -

GO:0004571

mannosyl-oligosaccharide 1,2-alpha-mannosidase activity

Details: 
Catalysis of the hydrolysis of the terminal (1->2)-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2).
GO Category: 
MF

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

GO:0006487

protein N-linked glycosylation

Details: 
A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the N4 atom of peptidyl-asparagine, the omega-N of arginine, or the N1' atom peptidyl-tryptophan.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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