40323 CPSaseII_lrg
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
40323 chr_4 CPSaseII_lrg 1183396 1188787 + CPSaseII_lrg
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0001
Normalized Mean Residue
Thaps_bicluster_0063
0.47
PseudoU_synth_RluCD_like
0.7977
Methyltransf_7 superfamily
0.7956
UPF0051
0.7896
NAD_binding_8 superfamily
0.7761
0.762
(bd729) NA
0.7565
hypothetical protein
0.752
(bd1828) NA
0.7482
(rps14) ribosomal protein S14
0.7434
PRK05444
0.7369
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II; This group... cl00020 294.019 5.53E-91 366 - 543 specific 153215
GAT_1 superfamily Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1... - 294.019 5.53E-91 366 - 543 superfamily 260141
MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS... cl00245 114.704 4.16E-29 1504 - 1617 specific 238711
MGS-like superfamily MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which... - 114.704 4.16E-29 1504 - 1617 superfamily 260295
CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase catalyses... cl17255 306.536 5.27E-95 694 - 898 specific 190425
ATP-grasp_4 superfamily ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent... - 110.469 1.46E-26 1232 - 1429 superfamily 266590
CPSase_sm_chain Carbamoyl-phosphate synthase small chain, CPSase domain; The carbamoyl-phosphate synthase domain is... cl03056 225.331 1.89E-67 186 - 323 specific 198165
CPSase_sm_chain superfamily Carbamoyl-phosphate synthase small chain, CPSase domain; The carbamoyl-phosphate synthase domain is... - 225.331 1.89E-67 186 - 323 superfamily 261567
CPSase_L_D3 Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase... cl19748 169.552 4.79E-48 982 - 1106 specific 198164
CPSase_L_D3 superfamily Carbamoyl-phosphate synthetase large chain, oligomerization domain; Carbamoyl-phosphate synthase... - 169.552 4.79E-48 982 - 1106 superfamily 268101
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_24195 PHATRDRAFT_24195 265069 234185 422007 Cre08.g358580.t1.1 AT1G29900.1 348996
KEGG description KEGG Pathway
Metabolic pathways map01100
GO:0003824 GO:0004086 GO:0005524 GO:0006807 GO:0005737 GO:0006526 GO:0019856 GO:0008152 GO:0016874 GO:0004087 -

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

NA

Details: 
NA
GO Category: 
NA

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

nitrogen compound metabolic process

Details: 
The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium.
GO Category: 
BP

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

arginine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
GO Category: 
BP

pyrimidine nucleobase biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases.
GO Category: 
BP

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

ligase activity

Details: 
Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

carbamoyl-phosphate synthase (ammonia) activity

Details: 
Catalysis of the reaction: 2 ATP + CO(2) + H(2)O + NH(4)(+) = 2 ADP + carbamoyl phosphate + 5 H(+) + phosphate.
GO Category: 
MF
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