41117 PRP1_N
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
41117 chr_6 PRP1_N 1352324 1355273 + PRP1_N
NCBI ID Ensembl Genomes exon ID
7442721 Thaps41117.2, Thaps41117.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0409
EEP superfamily
0.9403
Bromodomain superfamily
0.9259
hypothetical protein
0.9182
hypothetical protein
0.9181
AAA_12 superfamily
0.9168
COG1293
0.9165
S_TKc
0.9163
hypothetical protein
0.9152
ArsB_NhaD_permease superfamily
0.9141
hypothetical protein
0.9086
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PRP1_N superfamily PRP1 splicing factor, N-terminal; This domain is specific to the N-terminal part of the prp1... - 124.335 9.98E-33 11 - 159 superfamily 253721
PRP1_N superfamily PRP1 splicing factor, N-terminal; This domain is specific to the N-terminal part of the prp1... - 124.335 9.98E-33 11 - 159 superfamily 253721
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45989 PHATRDRAFT_45989 270678 264093 419034 Cre14.g633650.t1.1 AT4G03430.1 557662
KEGG description KEGG Pathway
Spliceosome map03040
GO:0005622 GO:0006396 GO:0000398 GO:0005634 -

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

mRNA splicing, via spliceosome

Details: 
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
GO Category: 
BP

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC
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