41117 PRP1_N
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
41117 chr_6 PRP1_N 1352324 1355273 + PRP1_N

Synonyms

NCBI ID Ensembl Genomes exon ID
7442721 Thaps41117.2, Thaps41117.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0409

Most Highly Correlated Transcripts

12836

EEP superfamily
0.9403

4862

Bromodomain superfamily
0.9259

22688

hypothetical protein
0.9182

20617

hypothetical protein
0.9181

262371

AAA_12 superfamily
0.9168

270000

COG1293
0.9165

269821

S_TKc
0.9163

22265

hypothetical protein
0.9152

269063

ArsB_NhaD_permease superfamily
0.9141

9912

hypothetical protein
0.9086

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PRP1_N superfamily PRP1 splicing factor, N-terminal; This domain is specific to the N-terminal part of the prp1... - 124.335 9.98E-33 11 - 159 superfamily 253721
PRP1_N superfamily PRP1 splicing factor, N-terminal; This domain is specific to the N-terminal part of the prp1... - 124.335 9.98E-33 11 - 159 superfamily 253721

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45989 PHATRDRAFT_45989 270678 264093 419034 Cre14.g633650.t1.1 AT4G03430.1 557662

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0005622 GO:0006396 GO:0000398 GO:0005634 -

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0000398

mRNA splicing, via spliceosome

Details: 
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
GO Category: 
BP

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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