41333 WD40 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
41333 chr_7 WD40 superfamily 909878 911269 + WD40 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449242 Thaps41333.1, Thaps41333.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0387

Most Highly Correlated Transcripts

13448

Sec1
0.9337

16295

FBPase
0.9134

270222

0.9104

37497

cysE
0.8999

19158

GRX_PICOT_like
0.8954

17585

APH_ChoK_like superfamily
0.888

22407

hypothetical protein
0.8866

16114

PLN02350
0.8851

264598

AAA
0.8775

37118

FeThRed_B
0.8775

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 107.806 6.09E-27 37 - 325 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 105.941 1.33E-25 37 - 327 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_24439 PHATRDRAFT_24439 271438 289259 Not available Cre06.g278097.t1.1 AT1G80670.1 360329

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0003847 -

GO:0003847

1-alkyl-2-acetylglycerophosphocholine esterase activity

Details: 
Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate.
GO Category: 
MF

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