4199 ApbAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
4199	chr_4	ApbA	434792	437375	-	ApbA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442093	Thaps4199.1, Thaps4199.4, Thaps4199.2, Thaps4199.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0310

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0026	0.39

Most Highly Correlated Transcripts

38707 Aldolase_Class_I superfamily 0.8417	29469 hypothetical protein 0.8265	38802 PHF5 0.8157	10752 hypothetical protein 0.8132	7929 hypothetical protein 0.8057	35136 NA 0.8035
36007 Aldolase_II superfamily 0.8012	270087 WD40 0.8005	19421 HECT 0.7973	11848 hypothetical protein 0.7965

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ApbA_C superfamily		Ketopantoate reductase PanE/ApbA C terminal; This is a family of 2-dehydropantoate 2-reductases...	-	108.454	1.83E-27	272 - 418	superfamily	254871
ApbA_C superfamily		Ketopantoate reductase PanE/ApbA C terminal; This is a family of 2-dehydropantoate 2-reductases...	-	108.454	1.83E-27	272 - 418	superfamily	254871
ApbA superfamily		Ketopantoate reductase PanE/ApbA; This is a family of 2-dehydropantoate 2-reductases also known as...	-	63.4067	1.05E-11	50 - 248	superfamily	251374
ApbA superfamily		Ketopantoate reductase PanE/ApbA; This is a family of 2-dehydropantoate 2-reductases also known as...	-	63.4067	1.05E-11	50 - 248	superfamily	251374
ApbA		Ketopantoate reductase [Coenzyme metabolism]	-	135.901	3.45E-35	50 - 421	multi-dom	224805

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_49053	PHATRDRAFT_49053	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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