42652 DRGThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
42652	chr_17	DRG	307328	308985	+	DRG

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444208	Thaps42652.3, Thaps42652.4, Thaps42652.1, Thaps42652.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0240

Most Highly Correlated Transcripts

19826 LSm1 0.9294	268443 SAICAR_synt_Sc 0.9217	6952 hypothetical protein 0.9175	36884 RimI 0.916	8015 hypothetical protein 0.9149	20712 hypothetical protein 0.914
36007 Aldolase_II superfamily 0.9133	3539 hypothetical protein 0.9128	39536 Zn-ribbon_RPB9 0.9108	7569 hypothetical protein 0.9106

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DRG		Developmentally Regulated GTP-binding protein (DRG); The developmentally regulated GTP-binding...	cl17170	368.412	1.40E-126	65 - 308	specific	206683
Ras_like_GTPase superfamily		Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase...	-	368.412	1.40E-126	65 - 308	superfamily	266525
TGS_DRG_C		TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding...	cl15768	122.974	2.24E-34	302 - 379	specific	133436
TGS superfamily		The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is...	-	122.974	2.24E-34	302 - 379	superfamily	265779
DRG		Predicted GTPase [General function prediction only]	-	471.377	4.85E-165	1 - 380	multi-dom	224085

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_50671	PHATRDRAFT_50671	203266	179687	316391	Cre01.g058886.t1.1	AT1G72660.3	486405

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005525 -

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