4288 WRN_exo
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4288 chr_4 WRN_exo 658005 664409 - WRN_exo

Synonyms

NCBI ID Ensembl Genomes exon ID
7452623 Thaps4288.2, Thaps4288.1, Thaps4288.4, Thaps4288.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0447

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0023
 0.43

Most Highly Correlated Transcripts

9378

hypothetical protein
0.8757

12836

EEP superfamily
0.8655

22288

hypothetical protein
0.8635

22577

hypothetical protein
0.8604

9036

hypothetical protein
0.8591

21220

KU superfamily
0.8534

10753

hypothetical protein
0.8451

22668

SUL1
0.8436

22266

hypothetical protein
0.8359

7426

hypothetical protein
0.8311

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins; WRN is a unique RecQ... cl10012 113.827 5.01E-28 1790 - 1970 specific 176653
DnaQ_like_exo superfamily DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; The DnaQ-like... - 113.827 5.01E-28 1790 - 1970 superfamily 263941
RAB3GAP2_N superfamily Rab3 GTPase-activating protein regulatory subunit N-terminus; This family includes the N-terminus... - 110.133 2.31E-25 675 - 793 superfamily 258793

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43586 PHATRDRAFT_43586 240057 320766 Not available Not available AT3G14910.1 504554

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0005622 GO:0008408 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0008408

3'-5' exonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.
GO Category: 
MF

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