4300 SCP superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4300 chr_4 SCP superfamily 687564 688958 + SCP superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7447498 Thaps4300.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0092

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0220
 0.24

Most Highly Correlated Transcripts

bd1173

(bd1173) S_TKc
0.9663

7236

hypothetical protein
0.963

3482

hypothetical protein
0.9611

bd1081

(bd1081) NA
0.9583

36911

Rhomboid
0.9567

bd765

(bd765) NA
0.9562

4653

hypothetical protein
0.9552

3882

hypothetical protein
0.9541

8926

MDR8
0.9527

2053

hypothetical protein
0.9527

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SCP superfamily SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family... - 74.1686 5.50E-16 317 - 450 superfamily 260208

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005576 -

GO:0005576

extracellular region

Details: 
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO Category: 
CC

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