46 (RL13A) Ribosomal_L13
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
46 chr_4 (RL13A) Ribosomal_L13 2347689 2348728 - Ribosomal_L13

Synonyms

NCBI ID Ensembl Genomes exon ID
7452267 Thaps46.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0047

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0227
 0.33

Most Highly Correlated Transcripts

39550

(RS7) Ribosomal_S7e
0.908

28049

PTZ00084
0.904

27167

(RL7) Ribosomal_L7_archeal_euk
0.897

264201

(RL8) PTZ00180
0.8923

26046

(RS3A) Ribosomal_S3Ae
0.8781

41319

(RL18) Ribosomal_L18e superfamily
0.8716

269235

(RL3) PTZ00103
0.8607

29217

PTZ00106
0.8592

37032

(RL6) KOW_RPL6
0.8582

26367

(RS15A) PTZ00158
0.8577

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ribosomal_L13 Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins... cl00333 104.124 1.81E-28 7 - 108 specific 238230
Ribosomal_L13 superfamily Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins... - 104.124 1.81E-28 7 - 108 superfamily 260361

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_25375 PHATRDRAFT_25375 170235 304222 414178 Cre12.g532550.t1.1 AT3G24830.1 285558

KEGG

KEGG description KEGG Pathway
Ribosome map03010

GO Terms

GO:0003735 GO:0006412 GO:0015934 GO:0005622 GO:0005840 -

GO:0003735

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0015934

large ribosomal subunit

Details: 
The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).
GO Category: 
CC

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0005840

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

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