4765 RRM3_RBM39_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4765 chr_4 RRM3_RBM39_like 1870882 1873979 + RRM3_RBM39_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7451954 Thaps4765.3, Thaps4765.1, Thaps4765.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0411

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0061
 0.42

Most Highly Correlated Transcripts

bd643

(bd643) NA
0.8853

bd877

(bd877) NA
0.856

23691

hypothetical protein
0.8389

3493

hypothetical protein
0.8333

3375

(Tp_Myb2R2) regulator [Rayko]
0.8271

bd690

(bd690) NA
0.8254

10510

hypothetical protein
0.8254

14378

S_TKc
0.8191

1249

hypothetical protein
0.8176

33717

PLN02856
0.8162

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM3_RBM39_like RNA recognition motif 3 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins; This... cl17169 105.704 8.87E-27 732 - 816 specific 240731
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 72.6387 1.81E-15 416 - 496 superfamily 266524
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 72.6387 1.81E-15 416 - 496 superfamily 266524
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 72.6387 1.81E-15 416 - 496 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_20857 PHATRDRAFT_20857 164728 130865 466113 Not available AT5G09880.1 249442

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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